PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01623g09005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 110aa    MW: 12087.2 Da    PI: 10.2979
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01623g09005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-191751135
                      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                              Cs C+tt TplWR+gp g+k+LCnaCG++y kk++
  Niben101Scf01623g09005.1 17 CSDCHTTRTPLWRSGPAGPKSLCNACGIKYNKKRR 51
                              ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.4131146IPR000679Zinc finger, GATA-type
SMARTSM004017.9E-131170IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-131251No hitNo description
CDDcd002027.82E-131669No hitNo description
Gene3DG3DSA:3.30.50.107.0E-161651IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.7E-171751IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401742IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MDLKEVKGSE VEKMKTCSDC HTTRTPLWRS GPAGPKSLCN ACGIKYNKKR RQLLGLDEGR  60
SDKGNKKRKI SGEKNGQSLK MKLMALGGKL REEEQAAILL MALSCGSVYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14868KRRQLLGLDEGRSDKGNKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758127.11e-67PREDICTED: GATA transcription factor 16-like
SwissprotQ9FJ102e-29GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A068VHS22e-45A0A068VHS2_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000814175e-43(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85032229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-25GATA transcription factor 16